Ken Chen, n/a
student
University of Pennsylvania
Philadelphia, Pennsylvania, United States
Zuozhen Tian, MS
Research Specialist
University of Pennsylvania
Philadelphia, Pennsylvania, United States
Frances S. Shofer, PhD
Adjunct Professor of Emergency Medicine
Department of Emergency Medicine, University of Pennsylvania School of Medicine
Philadelphia, Pennsylvania, United States
Daniel Sandroni, n/a
student
Germantown Friends School
Philadelphia, Pennsylvania, United States
Yejia Zhang, MD
Associate Professor
University of Pennsylvania
Philadelphia, Pennsylvania, United States
Back pain related to intervertebral disc (IVD) degeneration is a common clinical problem. Inflammatory cytokines and chemokines have been found in painful/degenerative human IVDs, and may account for some of the painful symptoms. The TNFAIP8 (tumor necrosis factor-α-induced protein 8) family comprises four highly homologous mammalian proteins, designated TNFAIP8 and TIPE1-3 (TNFAIP8-like 1-3, or TIPE1-3). The objective of this study is to determine the effects of Tnfaip8/Tipe2 gene deletion on the mouse IVD structure and global gene expression.
Design:
Morphological features of IVDs in the young adult Tnfaip8/Tipe2 double knockout (dKO) mice were compared with wild type (WT) mice on the same genetic background with Safranin’O and Hematoxylin & eosin staining. Histological scores were assessed by 2 independent readers. The whole RNA transcriptome of Tnfaip8/Tipe2 dKO mouse IVDs were compared with those of wild type mice by RNA sequencing (RNASeq).
Results:
The Tnfaip8/Tipe2 dKO mouse IVDs displayed higher levels of Safranin’O staining and better histological scores compared with WT (p< 0.01). A total of 349 genes differed in the IVDs of dKO and WT (P.adj < 0.01) mice. Gene ontology analysis for biological processes was performed, to give meaning to the 349 differentially expressed genes. Extracellular matrix organization and cell-substrate adhesion were the two most represented biological pathways. Protein-protein interaction network analysis revealed that fibronectin 1 and thrombospondin 1 had the highest number of protein-protein interactions.
Conclusions:
An unbiased bulk RNASeq approach was used to compare the transcriptomes of Tnfaip8/Tipe2-dKO and WT control mouse IVDs. Profound differences in the gene expression profiles were detected between the mutant and WT mouse IVDs. Importantly, Tnfaip8/Tipe2-dKO mouse discs retained more proteoglycan than the WT mice. Reduced expression locally in the disc may be beneficial in preventing tissue degeneration.